No. words: 1280; after pruning: 1254


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 5.9 (1,1:915)  334  0.56 0.00 0.28  UCW007F_H09_BE494426Ld08P013H01H071F1_065.ab1      557   914 (6)  C UCW007R_H09_BE494426Ld08P013H01H071R1_065.ab1   (0)   360     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1    UCW007F_H09_BE494426Ld08P013H01H071F1_065.ab1     1 
  569  C UCW007R_H09_BE494426Ld08P013H01H071R1_065.ab1   348 
  577    UCW007F_H09_BE494426Ld08P013H01H071F1_065.ab1   577 
  597  C UCW007R_H09_BE494426Ld08P013H01H071R1_065.ab1   320 
  605    UCW007F_H09_BE494426Ld08P013H01H071F1_065.ab1   605 
  621  C UCW007R_H09_BE494426Ld08P013H01H071R1_065.ab1   296 
  625    UCW007F_H09_BE494426Ld08P013H01H071F1_065.ab1   625 
  637  C UCW007R_H09_BE494426Ld08P013H01H071R1_065.ab1   280 
  861    UCW007F_H09_BE494426Ld08P013H01H071F1_065.ab1   861 
  870  C UCW007R_H09_BE494426Ld08P013H01H071R1_065.ab1    47 
  909    UCW007F_H09_BE494426Ld08P013H01H071F1_065.ab1   910 
Contig length: old 920, new 919

Contig length: old 919, new 919
New start: 0