No. words: 1166; after pruning: 1126


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.7 (1,1:909)  208  2.95 0.84 0.00  UCW007F_A10_BE494426Ld09P013H01H071F1_080.ab1        1   237 (0)  C UCW007R_A10_BE494426Ld09P013H01H071R1_080.ab1   (18)   911   673 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1  C UCW007R_A10_BE494426Ld09P013H01H071R1_080.ab1   929 
   33    UCW007F_A10_BE494426Ld09P013H01H071F1_080.ab1    13 
   65  C UCW007R_A10_BE494426Ld09P013H01H071R1_080.ab1   865 
   69    UCW007F_A10_BE494426Ld09P013H01H071F1_080.ab1    49 
  166  C UCW007R_A10_BE494426Ld09P013H01H071R1_080.ab1   764 
  177    UCW007F_A10_BE494426Ld09P013H01H071F1_080.ab1   157 
  217  C UCW007R_A10_BE494426Ld09P013H01H071R1_080.ab1   713 
  221    UCW007F_A10_BE494426Ld09P013H01H071F1_080.ab1   201 
  229  C UCW007R_A10_BE494426Ld09P013H01H071R1_080.ab1   701 
  233    UCW007F_A10_BE494426Ld09P013H01H071F1_080.ab1   213 
  237  C UCW007R_A10_BE494426Ld09P013H01H071R1_080.ab1   693 
Contig length: old 929, new 929

Contig length: old 929, new 929
New start: 0