No. words: 1832; after pruning: 1778


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 16.6 (1,1:904)  859  0.89 0.11 0.00  UCW007F_B10_BE494426Ld10P013H01H071F1_078.ab1        1   903 (3)  C UCW007R_B10_BE494426Ld10P013H01H071R1_078.ab1   (21)   905     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  434 nodes

 219 str. conn. components

Path
    1  C UCW007R_B10_BE494426Ld10P013H01H071R1_078.ab1   926 
   37    UCW007F_B10_BE494426Ld10P013H01H071F1_078.ab1    15 
  551  C UCW007R_B10_BE494426Ld10P013H01H071R1_078.ab1   376 
Contig length: old 927, new 926

Contig length: old 926, new 926
New start: 0