No. words: 1836; after pruning: 1796


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 18.4 (1,1:887)  855  0.23 0.00 0.00  UCW007F_C10_BE494426Tu01P013H01H071F1_076.ab1        8   888 (37)  C UCW007R_C10_BE494426Tu01P013H01H071R1_076.ab1   (30)   881     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  438 nodes

 221 str. conn. components

Path
    1  C UCW007R_C10_BE494426Tu01P013H01H071R1_076.ab1   911 
   34    UCW007F_C10_BE494426Tu01P013H01H071F1_076.ab1    11 
  550  C UCW007R_C10_BE494426Tu01P013H01H071R1_076.ab1   362 
  906    UCW007F_C10_BE494426Tu01P013H01H071F1_076.ab1   883 
Contig length: old 948, new 948

Contig length: old 948, new 948
New start: 0