No. words: 1842; after pruning: 1816


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 16.9 (1,1:907)  873  0.00 0.00 0.11  UCW007F_D10_BE494426Tu02P013H01H071F1_074.ab1       10   907 (7)  C UCW007R_D10_BE494426Tu02P013H01H071R1_074.ab1   (30)   898     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  448 nodes

 226 str. conn. components

Path
    1  C UCW007R_D10_BE494426Tu02P013H01H071R1_074.ab1   928 
   34    UCW007F_D10_BE494426Tu02P013H01H071F1_074.ab1    13 
  502  C UCW007R_D10_BE494426Tu02P013H01H071R1_074.ab1   427 
  546    UCW007F_D10_BE494426Tu02P013H01H071F1_074.ab1   525 
  550  C UCW007R_D10_BE494426Tu02P013H01H071R1_074.ab1   379 
  914    UCW007F_D10_BE494426Tu02P013H01H071F1_074.ab1   893 
Contig length: old 934, new 935

Contig length: old 935, new 935
New start: 0