No. words: 1609; after pruning: 1583


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.9 (1,1:1045)  518  2.31 0.00 0.00  UCW007F_A11_BE495277Ld01P013A02A081F1_095.ab1      217   779 (0)  C UCW007R_A11_BE495277Ld01P013A02A081R1_095.ab1   (0)   830   268 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1    UCW007F_A11_BE495277Ld01P013A02A081F1_095.ab1     1 
  261  C UCW007R_A11_BE495277Ld01P013A02A081R1_095.ab1   786 
  265    UCW007F_A11_BE495277Ld01P013A02A081F1_095.ab1   265 
  269  C UCW007R_A11_BE495277Ld01P013A02A081R1_095.ab1   778 
  273    UCW007F_A11_BE495277Ld01P013A02A081F1_095.ab1   273 
  301  C UCW007R_A11_BE495277Ld01P013A02A081R1_095.ab1   746 
  346    UCW007F_A11_BE495277Ld01P013A02A081F1_095.ab1   346 
  350  C UCW007R_A11_BE495277Ld01P013A02A081R1_095.ab1   697 
Contig length: old 1046, new 1046

Contig length: old 1046, new 1046
New start: 0 
S Change at: 245; seg lengths: entry 1, contig 1