No. words: 1708; after pruning: 1682


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:1159)  543  0.00 0.00 0.00  UCW007F_C11_BE495277Ld03P013A02A081F1_091.ab1      273   820 (0)  C UCW007R_C11_BE495277Ld03P013A02A081R1_091.ab1   (0)   888   341 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1    UCW007F_C11_BE495277Ld03P013A02A081F1_091.ab1     1 
  468  C UCW007R_C11_BE495277Ld03P013A02A081R1_091.ab1   693 
  472    UCW007F_C11_BE495277Ld03P013A02A081F1_091.ab1   472 
  520  C UCW007R_C11_BE495277Ld03P013A02A081R1_091.ab1   641 
  524    UCW007F_C11_BE495277Ld03P013A02A081F1_091.ab1   524 
  532  C UCW007R_C11_BE495277Ld03P013A02A081R1_091.ab1   629 
  568    UCW007F_C11_BE495277Ld03P013A02A081F1_091.ab1   568 
  576  C UCW007R_C11_BE495277Ld03P013A02A081R1_091.ab1   585 
Contig length: old 1160, new 1160

Contig length: old 1160, new 1160
New start: 0