No. words: 1754; after pruning: 1728


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.3 (1,1:1162)  563  1.36 0.00 0.00  UCW007F_D11_BE495277Ld04P013A02A081F1_089.ab1      320   909 (1)  C UCW007R_D11_BE495277Ld04P013A02A081R1_089.ab1   (0)   844   255 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1    UCW007F_D11_BE495277Ld04P013A02A081F1_089.ab1     1 
  473  C UCW007R_D11_BE495277Ld04P013A02A081R1_089.ab1   691 
  477    UCW007F_D11_BE495277Ld04P013A02A081F1_089.ab1   477 
  537  C UCW007R_D11_BE495277Ld04P013A02A081R1_089.ab1   627 
  569    UCW007F_D11_BE495277Ld04P013A02A081F1_089.ab1   569 
  573  C UCW007R_D11_BE495277Ld04P013A02A081R1_089.ab1   591 
Contig length: old 1163, new 1163

Contig length: old 1163, new 1163
New start: 0