No. words: 1744; after pruning: 1718


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:1170)  569  0.00 0.00 0.00  UCW007F_E11_BE495277Ld05P013A02A081F1_087.ab1      329   901 (0)  C UCW007R_E11_BE495277Ld05P013A02A081R1_087.ab1   (0)   843   271 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1    UCW007F_E11_BE495277Ld05P013A02A081F1_087.ab1     1 
  528  C UCW007R_E11_BE495277Ld05P013A02A081R1_087.ab1   644 
  532    UCW007F_E11_BE495277Ld05P013A02A081F1_087.ab1   532 
  540  C UCW007R_E11_BE495277Ld05P013A02A081R1_087.ab1   632 
  544    UCW007F_E11_BE495277Ld05P013A02A081F1_087.ab1   544 
  548  C UCW007R_E11_BE495277Ld05P013A02A081R1_087.ab1   624 
  580    UCW007F_E11_BE495277Ld05P013A02A081F1_087.ab1   580 
  584  C UCW007R_E11_BE495277Ld05P013A02A081R1_087.ab1   588 
Contig length: old 1171, new 1171

Contig length: old 1171, new 1171
New start: 0