No. words: 1581; after pruning: 1555


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:1038)  536  0.00 0.00 0.00  UCW059_G11_BE495277Sn25P033C04P013A021R1_083.ab1      257   798 (0)  C UCW060_G11_BE495277Sn25P033C04P013A021F1_083.ab1   (0)   783   242 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1    UCW059_G11_BE495277Sn25P033C04P013A021R1_083.ab1     1 
  609  C UCW060_G11_BE495277Sn25P033C04P013A021F1_083.ab1   431 
Contig length: old 1039, new 1039

Contig length: old 1039, new 1039
New start: 0