No. words: 1047; after pruning: 1021


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    5   -4.7 -4.7 (1,1:976)   26 17.46 0.00 0.00  UCW061_B03_BE495277Ta18P033A04P013A021R1_029.ab1      856   918 (2)  C UCW062_B03_BE495277Ta18P033A04P013A021F1_029.ab1   (5)   122    60 *
  Worst pair: offset 0 
LLR breakdown: discreps: -4.6 (<20 part: -4.6 (#=11), >20:0.0 (#=0); in HQ: -4.6, out HQ 0.0), match: 1.2  trail: -0.2  lead: -1.1  total: -4.7   26 17.46 0.00 0.00  UCW061_B03_BE495277Ta18P033A04P013A021R1_029.ab1      856   918 (2)  C UCW062_B03_BE495277Ta18P033A04P013A021F1_029.ab1   (5)   122    60 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.7       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  12 nodes

 8 str. conn. components

Path
    1    UCW061_B03_BE495277Ta18P033A04P013A021R1_029.ab1     1 
  871  C UCW062_B03_BE495277Ta18P033A04P013A021F1_029.ab1   107 
Contig length: old 977, new 977

Contig length: old 977, new 977
New start: 0 
S Change at: 876; seg lengths: entry 1, contig 1
S Change at: 882; seg lengths: entry 1, contig 1
S Change at: 888; seg lengths: entry 1, contig 1
S Change at: 893; seg lengths: entry 6, contig 6
S Change at: 902; seg lengths: entry 3, contig 3
S Change at: 908; seg lengths: entry 6, contig 6