No. words: 1473; after pruning: 1433


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.0 (1,1:1072)  388  0.50 0.00 0.00  UCW061_H04_BE495277Td08P033B04P013A021R1_018.ab1      486   882 (3)  C UCW062_H04_BE495277Td08P033B04P013A021F1_018.ab1   (0)   588   192 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1    UCW061_H04_BE495277Td08P033B04P013A021R1_018.ab1     1 
  548  C UCW062_H04_BE495277Td08P033B04P013A021F1_018.ab1   526 
  552    UCW061_H04_BE495277Td08P033B04P013A021R1_018.ab1   552 
  723  C UCW062_H04_BE495277Td08P033B04P013A021F1_018.ab1   351 
  727    UCW061_H04_BE495277Td08P033B04P013A021R1_018.ab1   727 
  743  C UCW062_H04_BE495277Td08P033B04P013A021F1_018.ab1   331 
  747    UCW061_H04_BE495277Td08P033B04P013A021R1_018.ab1   747 
  751  C UCW062_H04_BE495277Td08P033B04P013A021F1_018.ab1   323 
  763    UCW061_H04_BE495277Td08P033B04P013A021R1_018.ab1   763 
  767  C UCW062_H04_BE495277Td08P033B04P013A021F1_018.ab1   307 
  795    UCW061_H04_BE495277Td08P033B04P013A021R1_018.ab1   795 
  803  C UCW062_H04_BE495277Td08P033B04P013A021F1_018.ab1   271 
  811    UCW061_H04_BE495277Td08P033B04P013A021R1_018.ab1   811 
  815  C UCW062_H04_BE495277Td08P033B04P013A021F1_018.ab1   259 
Contig length: old 1073, new 1073

Contig length: old 1073, new 1073
New start: 0 
S Change at: 955; seg lengths: entry 1, contig 1