No. words: 1457; after pruning: 1431


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:706)  671  0.00 0.14 0.00  UCW005F_C06_BE497368At01P002H03H091F1_038.ab1        1   707 (19)  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   (23)   708     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   731 
   54    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1    30 
   86  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   646 
   90    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1    66 
  146  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   586 
  150    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   126 
  254  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   478 
  262    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   238 
  278  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   454 
  294    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   270 
  330  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   402 
  334    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   310 
  414  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   318 
  422    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   398 
  426  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   306 
  430    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   406 
  462  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   270 
  478    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   454 
  514  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   218 
  526    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   502 
  530  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   202 
  558    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   534 
  562  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   170 
  566    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   542 
  574  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   158 
  598    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   574 
  602  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1   130 
  654    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   630 
  662  C UCW005R_C06_BE497368At01P002H03H091R1_038.ab1    70 
  722    UCW005F_C06_BE497368At01P002H03H091F1_038.ab1   698 
Contig length: old 750, new 750

Contig length: old 750, new 750
New start: 0