No. words: 1222; after pruning: 1196


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:714)  486  0.20 0.00 0.00  UCW005F_D05_BE497368Ld04P002H03H091F1_042.ab1      177   683 (0)  C UCW005R_D05_BE497368Ld04P002H03H091R1_042.ab1   (0)   539    33 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1    UCW005F_D05_BE497368Ld04P002H03H091F1_042.ab1     1 
  385  C UCW005R_D05_BE497368Ld04P002H03H091R1_042.ab1   331 
  401    UCW005F_D05_BE497368Ld04P002H03H091F1_042.ab1   401 
  465  C UCW005R_D05_BE497368Ld04P002H03H091R1_042.ab1   251 
  469    UCW005F_D05_BE497368Ld04P002H03H091F1_042.ab1   469 
  485  C UCW005R_D05_BE497368Ld04P002H03H091R1_042.ab1   231 
  533    UCW005F_D05_BE497368Ld04P002H03H091F1_042.ab1   533 
  541  C UCW005R_D05_BE497368Ld04P002H03H091R1_042.ab1   175 
  549    UCW005F_D05_BE497368Ld04P002H03H091F1_042.ab1   549 
  557  C UCW005R_D05_BE497368Ld04P002H03H091R1_042.ab1   159 
  569    UCW005F_D05_BE497368Ld04P002H03H091F1_042.ab1   569 
  577  C UCW005R_D05_BE497368Ld04P002H03H091R1_042.ab1   139 
  665    UCW005F_D05_BE497368Ld04P002H03H091F1_042.ab1   665 
  673  C UCW005R_D05_BE497368Ld04P002H03H091R1_042.ab1    43 
Contig length: old 715, new 715

Contig length: old 715, new 715
New start: 0