No. words: 1360; after pruning: 1334


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:714)  612  0.16 0.16 0.00  UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1        5   648 (0)  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   (0)   712    68 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1     1 
    8  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   709 
   55    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1    54 
   63  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   654 
   67    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1    66 
   83  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   634 
   87    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1    86 
  231  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   486 
  247    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   246 
  263  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   454 
  267    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   266 
  299  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   418 
  303    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   302 
  339  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   378 
  343    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   342 
  383  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   334 
  399    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   398 
  407  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   310 
  419    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   418 
  431  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   286 
  435    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   434 
  443  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   274 
  447    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   446 
  463  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   254 
  467    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   466 
  479  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   238 
  487    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   486 
  491  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   226 
  507    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   506 
  527  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   190 
  539    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   538 
  543  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   174 
  547    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   546 
  551  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   166 
  563    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   562 
  567  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   150 
  571    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   570 
  575  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   142 
  579    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   578 
  583  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   134 
  587    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   586 
  599  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   118 
  607    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   606 
  611  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1   106 
  631    UCW005F_E05_BE497368Ld05P002H03H091F1_035.ab1   630 
  635  C UCW005R_E05_BE497368Ld05P002H03H091R1_035.ab1    82 
Contig length: old 715, new 716

Contig length: old 716, new 716
New start: 0