No. words: 734; after pruning: 708


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.4 (1,1:530)  177  1.98 0.50 0.00  UCW049_E12_BE497368Sn30P002G09P022G111F1_088.ab1       31   232 (0)  C UCW050_E12_BE497368Sn30P002G09P022G111R1_088.ab1   (0)   502   300 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  90 nodes

 47 str. conn. components

Path
    1    UCW049_E12_BE497368Sn30P002G09P022G111F1_088.ab1     1 
   34  C UCW050_E12_BE497368Sn30P002G09P022G111R1_088.ab1   499 
   38    UCW049_E12_BE497368Sn30P002G09P022G111F1_088.ab1    38 
  163  C UCW050_E12_BE497368Sn30P002G09P022G111R1_088.ab1   369 
  187    UCW049_E12_BE497368Sn30P002G09P022G111F1_088.ab1   187 
  191  C UCW050_E12_BE497368Sn30P002G09P022G111R1_088.ab1   341 
Contig length: old 531, new 531

Contig length: old 531, new 531
New start: 0