No. words: 1140; after pruning: 1114


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 6.3 (1,1:541)  491  0.00 0.37 0.56  UCW049_G12_BE497368Sn32P002G09P022G111F1_084.ab1        8   544 (11)  C UCW050_G12_BE497368Sn32P002G09P022G111R1_084.ab1   (49)   536     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C UCW050_G12_BE497368Sn32P002G09P022G111R1_084.ab1   585 
   82    UCW049_G12_BE497368Sn32P002G09P022G111F1_084.ab1    38 
   86  C UCW050_G12_BE497368Sn32P002G09P022G111R1_084.ab1   500 
  106    UCW049_G12_BE497368Sn32P002G09P022G111F1_084.ab1    62 
  130  C UCW050_G12_BE497368Sn32P002G09P022G111R1_084.ab1   456 
  138    UCW049_G12_BE497368Sn32P002G09P022G111F1_084.ab1    94 
  146  C UCW050_G12_BE497368Sn32P002G09P022G111R1_084.ab1   440 
  170    UCW049_G12_BE497368Sn32P002G09P022G111F1_084.ab1   126 
  230  C UCW050_G12_BE497368Sn32P002G09P022G111R1_084.ab1   356 
  250    UCW049_G12_BE497368Sn32P002G09P022G111F1_084.ab1   206 
  274  C UCW050_G12_BE497368Sn32P002G09P022G111R1_084.ab1   312 
  342    UCW049_G12_BE497368Sn32P002G09P022G111F1_084.ab1   298 
  346  C UCW050_G12_BE497368Sn32P002G09P022G111R1_084.ab1   240 
  350    UCW049_G12_BE497368Sn32P002G09P022G111F1_084.ab1   306 
  358  C UCW050_G12_BE497368Sn32P002G09P022G111R1_084.ab1   228 
  542    UCW049_G12_BE497368Sn32P002G09P022G111F1_084.ab1   498 
  546  C UCW050_G12_BE497368Sn32P002G09P022G111R1_084.ab1    40 
  581    UCW049_G12_BE497368Sn32P002G09P022G111F1_084.ab1   540 
Contig length: old 598, new 596

Contig length: old 596, new 598
New start: 0 
I Change at: 568; seg lengths: entry 1, contig 0
I Change at: 574; seg lengths: entry 1, contig 0