No. words: 1177; after pruning: 1151


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 10.3 (1,1:541)  507  0.00 0.19 0.00  UCW049_B10_BE497368Ta12P002G09P022G111F1_078.ab1       10   542 (55)  C UCW050_B10_BE497368Ta12P002G09P022G111R1_078.ab1   (46)   534     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C UCW050_B10_BE497368Ta12P002G09P022G111R1_078.ab1   580 
  373    UCW049_B10_BE497368Ta12P002G09P022G111F1_078.ab1   335 
  385  C UCW050_B10_BE497368Ta12P002G09P022G111R1_078.ab1   196 
  401    UCW049_B10_BE497368Ta12P002G09P022G111F1_078.ab1   363 
  413  C UCW050_B10_BE497368Ta12P002G09P022G111R1_078.ab1   168 
  469    UCW049_B10_BE497368Ta12P002G09P022G111F1_078.ab1   431 
  481  C UCW050_B10_BE497368Ta12P002G09P022G111R1_078.ab1   100 
  485    UCW049_B10_BE497368Ta12P002G09P022G111F1_078.ab1   447 
  493  C UCW050_B10_BE497368Ta12P002G09P022G111R1_078.ab1    88 
  501    UCW049_B10_BE497368Ta12P002G09P022G111F1_078.ab1   463 
  505  C UCW050_B10_BE497368Ta12P002G09P022G111R1_078.ab1    76 
  533    UCW049_B10_BE497368Ta12P002G09P022G111F1_078.ab1   495 
Contig length: old 635, new 635

Contig length: old 635, new 635
New start: 0