No. words: 1140; after pruning: 1114


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.3 (1,1:514)  486  0.00 0.20 0.20  UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1        5   515 (60)  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1   (54)   511     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1   565 
   62    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1    12 
   78  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1   488 
   89    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1    38 
  113  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1   453 
  141    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1    90 
  153  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1   413 
  225    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1   174 
  253  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1   313 
  365    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1   314 
  369  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1   197 
  393    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1   342 
  405  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1   161 
  409    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1   358 
  417  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1   149 
  421    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1   370 
  425  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1   141 
  429    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1   378 
  437  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1   129 
  453    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1   402 
  457  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1   109 
  473    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1   422 
  481  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1    85 
  497    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1   446 
  501  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1    65 
  525    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1   474 
  533  C UCW048_G05_BE497368Ta15P002H09P022F111R1_035.ab1    33 
  541    UCW047_G05_BE497368Ta15P002H09P022F111F1_035.ab1   490 
Contig length: old 625, new 626

Contig length: old 626, new 626
New start: 0