No. words: 1145; after pruning: 1119


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.3 (1,1:520)  490  0.00 0.19 0.19  UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1        5   519 (55)  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   (54)   517     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   571 
   89    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1    38 
   97  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   475 
  101    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1    50 
  117  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   455 
  173    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   122 
  189  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   383 
  197    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   146 
  205  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   367 
  225    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   174 
  229  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   343 
  245    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   194 
  249  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   323 
  337    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   286 
  341  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   231 
  349    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   298 
  369  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   203 
  393    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   342 
  401  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   171 
  409    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   358 
  413  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   159 
  421    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   370 
  437  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   135 
  445    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   394 
  449  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1   123 
  461    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   410 
  493  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1    79 
  497    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   446 
  509  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1    63 
  525    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   474 
  533  C UCW048_H05_BE497368Ta16P002H09P022F111R1_033.ab1    39 
  537    UCW047_H05_BE497368Ta16P002H09P022F111F1_033.ab1   486 
Contig length: old 624, new 625

Contig length: old 625, new 625
New start: 0