No. words: 1178; after pruning: 1152


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.3 (1,1:555)  512  0.00 0.36 0.36  UCW049_A11_BE497368Ta19P002G09P022G111F1_095.ab1        6   557 (32)  C UCW050_A11_BE497368Ta19P002G09P022G111R1_095.ab1   (37)   552     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C UCW050_A11_BE497368Ta19P002G09P022G111R1_095.ab1   589 
   98    UCW049_A11_BE497368Ta19P002G09P022G111F1_095.ab1    64 
  114  C UCW050_A11_BE497368Ta19P002G09P022G111R1_095.ab1   476 
  186    UCW049_A11_BE497368Ta19P002G09P022G111F1_095.ab1   152 
  190  C UCW050_A11_BE497368Ta19P002G09P022G111R1_095.ab1   400 
  458    UCW049_A11_BE497368Ta19P002G09P022G111F1_095.ab1   424 
  474  C UCW050_A11_BE497368Ta19P002G09P022G111R1_095.ab1   116 
  482    UCW049_A11_BE497368Ta19P002G09P022G111F1_095.ab1   448 
  494  C UCW050_A11_BE497368Ta19P002G09P022G111R1_095.ab1    96 
  498    UCW049_A11_BE497368Ta19P002G09P022G111F1_095.ab1   464 
  502  C UCW050_A11_BE497368Ta19P002G09P022G111R1_095.ab1    88 
  506    UCW049_A11_BE497368Ta19P002G09P022G111F1_095.ab1   472 
Contig length: old 622, new 623

Contig length: old 623, new 623
New start: 0