No. words: 1172; after pruning: 1146


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.7 (1,1:540)  503  0.00 0.56 0.00  UCW049_B11_BE497368Ta20P002G09P022G111F1_093.ab1        4   540 (47)  C UCW050_B11_BE497368Ta20P002G09P022G111R1_093.ab1   (45)   540     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C UCW050_B11_BE497368Ta20P002G09P022G111R1_093.ab1   585 
  374    UCW049_B11_BE497368Ta20P002G09P022G111F1_093.ab1   329 
  394  C UCW050_B11_BE497368Ta20P002G09P022G111R1_093.ab1   192 
  402    UCW049_B11_BE497368Ta20P002G09P022G111F1_093.ab1   357 
  418  C UCW050_B11_BE497368Ta20P002G09P022G111R1_093.ab1   168 
  474    UCW049_B11_BE497368Ta20P002G09P022G111F1_093.ab1   429 
  498  C UCW050_B11_BE497368Ta20P002G09P022G111R1_093.ab1    88 
  506    UCW049_B11_BE497368Ta20P002G09P022G111F1_093.ab1   461 
  510  C UCW050_B11_BE497368Ta20P002G09P022G111R1_093.ab1    76 
  538    UCW049_B11_BE497368Ta20P002G09P022G111F1_093.ab1   493 
Contig length: old 631, new 632

Contig length: old 632, new 632
New start: 0