No. words: 1132; after pruning: 1106


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:511)  488  0.20 0.00 0.20  UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1        1   512 (57)  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1   (52)   511     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1   563 
   60    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1     8 
   64  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1   500 
  104    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1    52 
  108  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1   456 
  172    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1   120 
  176  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1   388 
  196    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1   144 
  200  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1   364 
  216    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1   164 
  220  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1   344 
  228    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1   176 
  232  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1   332 
  392    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1   340 
  396  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1   168 
  420    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1   368 
  424  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1   140 
  432    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1   380 
  436  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1   128 
  448    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1   396 
  456  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1   108 
  468    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1   416 
  484  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1    80 
  496    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1   444 
  500  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1    64 
  524    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1   472 
  532  C UCW048_E06_BE497368Ta21P002H09P022F111R1_040.ab1    32 
  536    UCW047_E06_BE497368Ta21P002H09P022F111F1_040.ab1   484 
Contig length: old 620, new 621

Contig length: old 621, new 621
New start: 0