No. words: 1137; after pruning: 1111


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.1 (1,1:515)  489  0.00 0.19 0.19  UCW047_A04_BE497368Td01P002H09P022F111F1_032.ab1        1   514 (54)  C UCW048_A04_BE497368Td01P002H09P022F111R1_032.ab1   (53)   516     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCW048_A04_BE497368Td01P002H09P022F111R1_032.ab1   569 
  419    UCW047_A04_BE497368Td01P002H09P022F111F1_032.ab1   365 
  435  C UCW048_A04_BE497368Td01P002H09P022F111R1_032.ab1   135 
  443    UCW047_A04_BE497368Td01P002H09P022F111F1_032.ab1   389 
  447  C UCW048_A04_BE497368Td01P002H09P022F111R1_032.ab1   123 
  463    UCW047_A04_BE497368Td01P002H09P022F111F1_032.ab1   409 
  487  C UCW048_A04_BE497368Td01P002H09P022F111R1_032.ab1    83 
  495    UCW047_A04_BE497368Td01P002H09P022F111F1_032.ab1   441 
  511  C UCW048_A04_BE497368Td01P002H09P022F111R1_032.ab1    59 
  523    UCW047_A04_BE497368Td01P002H09P022F111F1_032.ab1   469 
  531  C UCW048_A04_BE497368Td01P002H09P022F111R1_032.ab1    39 
  535    UCW047_A04_BE497368Td01P002H09P022F111F1_032.ab1   481 
Contig length: old 621, new 622

Contig length: old 622, new 622
New start: 0