No. words: 1127; after pruning: 1101


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.4 (1,1:515)  497  0.00 0.00 0.00  UCW053_B07_BE497368Td02P002H09P022G111F1_061.ab1        3   516 (56)  C UCW054_B07_BE497368Td02P002H09P022G111R1_061.ab1   (41)   514     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1  C UCW054_B07_BE497368Td02P002H09P022G111R1_061.ab1   555 
   85    UCW053_B07_BE497368Td02P002H09P022G111F1_061.ab1    46 
  109  C UCW054_B07_BE497368Td02P002H09P022G111R1_061.ab1   447 
  113    UCW053_B07_BE497368Td02P002H09P022G111F1_061.ab1    74 
  129  C UCW054_B07_BE497368Td02P002H09P022G111R1_061.ab1   427 
  133    UCW053_B07_BE497368Td02P002H09P022G111F1_061.ab1    94 
  149  C UCW054_B07_BE497368Td02P002H09P022G111R1_061.ab1   407 
  157    UCW053_B07_BE497368Td02P002H09P022G111F1_061.ab1   118 
  161  C UCW054_B07_BE497368Td02P002H09P022G111R1_061.ab1   395 
  165    UCW053_B07_BE497368Td02P002H09P022G111F1_061.ab1   126 
  381  C UCW054_B07_BE497368Td02P002H09P022G111R1_061.ab1   175 
  397    UCW053_B07_BE497368Td02P002H09P022G111F1_061.ab1   358 
  425  C UCW054_B07_BE497368Td02P002H09P022G111R1_061.ab1   131 
  437    UCW053_B07_BE497368Td02P002H09P022G111F1_061.ab1   398 
  457  C UCW054_B07_BE497368Td02P002H09P022G111R1_061.ab1    99 
  461    UCW053_B07_BE497368Td02P002H09P022G111F1_061.ab1   422 
  517  C UCW054_B07_BE497368Td02P002H09P022G111R1_061.ab1    39 
  525    UCW053_B07_BE497368Td02P002H09P022G111F1_061.ab1   486 
Contig length: old 611, new 611

Contig length: old 611, new 611
New start: 0