No. words: 1132; after pruning: 1106


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:509)  489  0.00 0.00 0.20  UCW047_C04_BE497368Td03P002H09P022F111F1_028.ab1        1   510 (59)  C UCW048_C04_BE497368Td03P002H09P022F111R1_028.ab1   (54)   509     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C UCW048_C04_BE497368Td03P002H09P022F111R1_028.ab1   563 
  102    UCW047_C04_BE497368Td03P002H09P022F111F1_028.ab1    48 
  106  C UCW048_C04_BE497368Td03P002H09P022F111R1_028.ab1   458 
  418    UCW047_C04_BE497368Td03P002H09P022F111F1_028.ab1   364 
  426  C UCW048_C04_BE497368Td03P002H09P022F111R1_028.ab1   138 
  430    UCW047_C04_BE497368Td03P002H09P022F111F1_028.ab1   376 
  434  C UCW048_C04_BE497368Td03P002H09P022F111R1_028.ab1   130 
  462    UCW047_C04_BE497368Td03P002H09P022F111F1_028.ab1   408 
  498  C UCW048_C04_BE497368Td03P002H09P022F111R1_028.ab1    66 
  518    UCW047_C04_BE497368Td03P002H09P022F111F1_028.ab1   464 
Contig length: old 622, new 623

Contig length: old 623, new 623
New start: 0