No. words: 1146; after pruning: 1120


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.8 (1,1:521)  492  0.19 0.00 0.19  UCW047_D04_BE497368Td04P002H09P022F111F1_026.ab1        3   518 (55)  C UCW048_D04_BE497368Td04P002H09P022F111R1_026.ab1   (54)   519     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C UCW048_D04_BE497368Td04P002H09P022F111R1_026.ab1   573 
   70    UCW047_D04_BE497368Td04P002H09P022F111F1_026.ab1    18 
   74  C UCW048_D04_BE497368Td04P002H09P022F111R1_026.ab1   500 
  422    UCW047_D04_BE497368Td04P002H09P022F111F1_026.ab1   370 
  426  C UCW048_D04_BE497368Td04P002H09P022F111R1_026.ab1   148 
  430    UCW047_D04_BE497368Td04P002H09P022F111F1_026.ab1   378 
  438  C UCW048_D04_BE497368Td04P002H09P022F111R1_026.ab1   136 
  462    UCW047_D04_BE497368Td04P002H09P022F111F1_026.ab1   410 
  486  C UCW048_D04_BE497368Td04P002H09P022F111R1_026.ab1    88 
  494    UCW047_D04_BE497368Td04P002H09P022F111F1_026.ab1   442 
  510  C UCW048_D04_BE497368Td04P002H09P022F111R1_026.ab1    64 
  526    UCW047_D04_BE497368Td04P002H09P022F111F1_026.ab1   474 
Contig length: old 624, new 625

Contig length: old 625, new 625
New start: 0