No. words: 1141; after pruning: 1115


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.1 (1,1:519)  495  0.00 0.00 0.19  UCW047_G04_BE497368Td07P002H09P022F111F1_020.ab1        1   516 (54)  C UCW048_G04_BE497368Td07P002H09P022F111R1_020.ab1   (52)   519     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C UCW048_G04_BE497368Td07P002H09P022F111R1_020.ab1   571 
  264    UCW047_G04_BE497368Td07P002H09P022F111F1_020.ab1   212 
  268  C UCW048_G04_BE497368Td07P002H09P022F111R1_020.ab1   304 
  420    UCW047_G04_BE497368Td07P002H09P022F111F1_020.ab1   368 
  424  C UCW048_G04_BE497368Td07P002H09P022F111R1_020.ab1   148 
  428    UCW047_G04_BE497368Td07P002H09P022F111F1_020.ab1   376 
  436  C UCW048_G04_BE497368Td07P002H09P022F111R1_020.ab1   136 
  468    UCW047_G04_BE497368Td07P002H09P022F111F1_020.ab1   416 
  508  C UCW048_G04_BE497368Td07P002H09P022F111R1_020.ab1    64 
  524    UCW047_G04_BE497368Td07P002H09P022F111F1_020.ab1   472 
  532  C UCW048_G04_BE497368Td07P002H09P022F111R1_020.ab1    40 
  536    UCW047_G04_BE497368Td07P002H09P022F111F1_020.ab1   484 
Contig length: old 621, new 622

Contig length: old 622, new 622
New start: 0