No. words: 1124; after pruning: 1098


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.8 (1,1:514)  493  0.00 0.00 0.19  UCW053_G07_BE497368Td07P002H09P022G111F1_051.ab1        2   515 (56)  C UCW054_G07_BE497368Td07P002H09P022G111R1_051.ab1   (40)   513     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C UCW054_G07_BE497368Td07P002H09P022G111R1_051.ab1   553 
  444    UCW053_G07_BE497368Td07P002H09P022G111F1_051.ab1   405 
  456  C UCW054_G07_BE497368Td07P002H09P022G111R1_051.ab1    98 
  464    UCW053_G07_BE497368Td07P002H09P022G111F1_051.ab1   425 
  476  C UCW054_G07_BE497368Td07P002H09P022G111R1_051.ab1    78 
  524    UCW053_G07_BE497368Td07P002H09P022G111F1_051.ab1   485 
Contig length: old 609, new 610

Contig length: old 610, new 610
New start: 0