No. words: 1122; after pruning: 1096


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:511)  487  0.00 0.39 0.00  UCW053_H07_BE497368Td08P002H09P022G111F1_049.ab1        1   511 (48)  C UCW054_H07_BE497368Td08P002H09P022G111R1_049.ab1   (50)   513     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCW054_H07_BE497368Td08P002H09P022G111R1_049.ab1   563 
   75    UCW053_H07_BE497368Td08P002H09P022G111F1_049.ab1    23 
  147  C UCW054_H07_BE497368Td08P002H09P022G111R1_049.ab1   417 
  155    UCW053_H07_BE497368Td08P002H09P022G111F1_049.ab1   103 
  395  C UCW054_H07_BE497368Td08P002H09P022G111R1_049.ab1   169 
  427    UCW053_H07_BE497368Td08P002H09P022G111F1_049.ab1   375 
  487  C UCW054_H07_BE497368Td08P002H09P022G111R1_049.ab1    77 
  503    UCW053_H07_BE497368Td08P002H09P022G111F1_049.ab1   451 
Contig length: old 610, new 611

Contig length: old 611, new 611
New start: 0