No. words: 1135; after pruning: 1109


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:511)  491  0.00 0.00 0.20  UCW047_A05_BE497368Td09P002H09P022F111F1_047.ab1        1   512 (60)  C UCW048_A05_BE497368Td09P002H09P022F111R1_047.ab1   (52)   511     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C UCW048_A05_BE497368Td09P002H09P022F111R1_047.ab1   563 
  100    UCW047_A05_BE497368Td09P002H09P022F111F1_047.ab1    48 
  112  C UCW048_A05_BE497368Td09P002H09P022F111R1_047.ab1   452 
  172    UCW047_A05_BE497368Td09P002H09P022F111F1_047.ab1   120 
  176  C UCW048_A05_BE497368Td09P002H09P022F111R1_047.ab1   388 
  196    UCW047_A05_BE497368Td09P002H09P022F111F1_047.ab1   144 
  200  C UCW048_A05_BE497368Td09P002H09P022F111R1_047.ab1   364 
  380    UCW047_A05_BE497368Td09P002H09P022F111F1_047.ab1   328 
  384  C UCW048_A05_BE497368Td09P002H09P022F111R1_047.ab1   180 
  408    UCW047_A05_BE497368Td09P002H09P022F111F1_047.ab1   356 
  416  C UCW048_A05_BE497368Td09P002H09P022F111R1_047.ab1   148 
  420    UCW047_A05_BE497368Td09P002H09P022F111F1_047.ab1   368 
  424  C UCW048_A05_BE497368Td09P002H09P022F111R1_047.ab1   140 
  428    UCW047_A05_BE497368Td09P002H09P022F111F1_047.ab1   376 
  436  C UCW048_A05_BE497368Td09P002H09P022F111R1_047.ab1   128 
  448    UCW047_A05_BE497368Td09P002H09P022F111F1_047.ab1   396 
  456  C UCW048_A05_BE497368Td09P002H09P022F111R1_047.ab1   108 
  468    UCW047_A05_BE497368Td09P002H09P022F111F1_047.ab1   416 
  508  C UCW048_A05_BE497368Td09P002H09P022F111R1_047.ab1    56 
  524    UCW047_A05_BE497368Td09P002H09P022F111F1_047.ab1   472 
  532  C UCW048_A05_BE497368Td09P002H09P022F111R1_047.ab1    32 
  536    UCW047_A05_BE497368Td09P002H09P022F111F1_047.ab1   484 
Contig length: old 623, new 624

Contig length: old 624, new 624
New start: 0