No. words: 1131; after pruning: 1105


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:509)  485  0.00 0.20 0.20  UCW047_B05_BE497368Td10P002H09P022F111F1_045.ab1        1   510 (58)  C UCW048_B05_BE497368Td10P002H09P022F111R1_045.ab1   (53)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C UCW048_B05_BE497368Td10P002H09P022F111R1_045.ab1   563 
  419    UCW047_B05_BE497368Td10P002H09P022F111F1_045.ab1   365 
  423  C UCW048_B05_BE497368Td10P002H09P022F111R1_045.ab1   141 
  427    UCW047_B05_BE497368Td10P002H09P022F111F1_045.ab1   373 
  431  C UCW048_B05_BE497368Td10P002H09P022F111R1_045.ab1   133 
  439    UCW047_B05_BE497368Td10P002H09P022F111F1_045.ab1   385 
  443  C UCW048_B05_BE497368Td10P002H09P022F111R1_045.ab1   121 
  455    UCW047_B05_BE497368Td10P002H09P022F111F1_045.ab1   401 
  459  C UCW048_B05_BE497368Td10P002H09P022F111R1_045.ab1   105 
  467    UCW047_B05_BE497368Td10P002H09P022F111F1_045.ab1   413 
  491  C UCW048_B05_BE497368Td10P002H09P022F111R1_045.ab1    73 
  495    UCW047_B05_BE497368Td10P002H09P022F111F1_045.ab1   441 
  511  C UCW048_B05_BE497368Td10P002H09P022F111R1_045.ab1    53 
  527    UCW047_B05_BE497368Td10P002H09P022F111F1_045.ab1   473 
  531  C UCW048_B05_BE497368Td10P002H09P022F111R1_045.ab1    33 
  535    UCW047_B05_BE497368Td10P002H09P022F111F1_045.ab1   481 
Contig length: old 621, new 622

Contig length: old 622, new 622
New start: 0