No. words: 1427; after pruning: 1387


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.8 (1,1:688)  659  0.15 0.00 0.00  UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1        4   689 (30)  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   (22)   686     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   708 
   30    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1    11 
   42  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   667 
   46    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1    27 
   78  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   631 
   82    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1    63 
  146  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   563 
  150    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1   131 
  406  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   303 
  434    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1   415 
  486  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   223 
  490    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1   471 
  494  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   215 
  506    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1   487 
  526  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   183 
  538    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1   519 
  546  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   163 
  558    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1   539 
  578  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   131 
  582    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1   563 
  590  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   119 
  594    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1   575 
  606  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1   103 
  610    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1   591 
  630  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1    79 
  638    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1   619 
  646  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1    63 
  678    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1   659 
  690  C UCW005R_H05_BE497368Tu01P002H03H091R1_044.ab1    19 
  703    UCW005F_H05_BE497368Tu01P002H03H091F1_044.ab1   684 
Contig length: old 738, new 738

Contig length: old 738, new 738
New start: 0