No. words: 1621; after pruning: 1581


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.3 (1,1:866)  708  1.06 0.00 0.13  UCW006F_E06_BE497820As01P002F03F091F1_039.ab1        2   755 (0)  C UCW006R_E06_BE497820As01P002F03F091R1_039.ab1   (0)   866   114 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1    UCW006F_E06_BE497820As01P002F03F091F1_039.ab1     1 
  307  C UCW006R_E06_BE497820As01P002F03F091R1_039.ab1   562 
  311    UCW006F_E06_BE497820As01P002F03F091F1_039.ab1   311 
  315  C UCW006R_E06_BE497820As01P002F03F091R1_039.ab1   554 
  323    UCW006F_E06_BE497820As01P002F03F091F1_039.ab1   323 
  339  C UCW006R_E06_BE497820As01P002F03F091R1_039.ab1   530 
  347    UCW006F_E06_BE497820As01P002F03F091F1_039.ab1   347 
  355  C UCW006R_E06_BE497820As01P002F03F091R1_039.ab1   514 
  363    UCW006F_E06_BE497820As01P002F03F091F1_039.ab1   363 
  379  C UCW006R_E06_BE497820As01P002F03F091R1_039.ab1   490 
  387    UCW006F_E06_BE497820As01P002F03F091F1_039.ab1   387 
  391  C UCW006R_E06_BE497820As01P002F03F091R1_039.ab1   478 
  403    UCW006F_E06_BE497820As01P002F03F091F1_039.ab1   403 
  419  C UCW006R_E06_BE497820As01P002F03F091R1_039.ab1   450 
  423    UCW006F_E06_BE497820As01P002F03F091F1_039.ab1   423 
  427  C UCW006R_E06_BE497820As01P002F03F091R1_039.ab1   442 
Contig length: old 867, new 868

Contig length: old 868, new 868
New start: 0