No. words: 1218; after pruning: 1192


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
 -732  -854  0 -370    312     S -732- -421
Fail: (1)  312   -4.3 -4.3 (1,1:854)   46  1.96 0.00 0.00  UCW006F_F06_BE497820As02P002F03F091F1_047.ab1      435   485 (0)  C UCW006R_F06_BE497820As02P002F03F091R1_047.ab1   (312)   421   371 *
  Worst pair: offset 0 
LLR breakdown: discreps: -0.1 (<20 part: -0.1 (#=1), >20:0.0 (#=0); in HQ: -0.1, out HQ 0.0), match: 1.1  lead: -5.4  total: -4.4   46  1.96 0.00 0.00  UCW006F_F06_BE497820As02P002F03F091F1_047.ab1      435   485 (0)  C UCW006R_F06_BE497820As02P002F03F091R1_047.ab1   (312)   421   371 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.3       0        1

Gap   # merges  # failures
 size
312       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    UCW006R_F06_BE497820As02P002F03F091R1_047.ab1     1 
Contig length: old 733, new 733

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    UCW006F_F06_BE497820As02P002F03F091F1_047.ab1     1 
Contig length: old 485, new 485