No. words: 1636; after pruning: 1596


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.4 (1,1:870)  725  0.65 0.00 0.39  UCW006F_H06_BE497820At02P002F03F091F1_048.ab1       16   780 (0)  C UCW006R_H06_BE497820At02P002F03F091R1_048.ab1   (0)   856    95 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  360 nodes

 182 str. conn. components

Path
    1    UCW006F_H06_BE497820At02P002F03F091F1_048.ab1     1 
  320  C UCW006R_H06_BE497820At02P002F03F091R1_048.ab1   552 
  328    UCW006F_H06_BE497820At02P002F03F091F1_048.ab1   328 
  340  C UCW006R_H06_BE497820At02P002F03F091R1_048.ab1   532 
  348    UCW006F_H06_BE497820At02P002F03F091F1_048.ab1   348 
  356  C UCW006R_H06_BE497820At02P002F03F091R1_048.ab1   516 
  364    UCW006F_H06_BE497820At02P002F03F091F1_048.ab1   364 
  372  C UCW006R_H06_BE497820At02P002F03F091R1_048.ab1   500 
  380    UCW006F_H06_BE497820At02P002F03F091F1_048.ab1   380 
  392  C UCW006R_H06_BE497820At02P002F03F091R1_048.ab1   480 
  412    UCW006F_H06_BE497820At02P002F03F091F1_048.ab1   412 
  416  C UCW006R_H06_BE497820At02P002F03F091R1_048.ab1   456 
  432    UCW006F_H06_BE497820At02P002F03F091F1_048.ab1   432 
  436  C UCW006R_H06_BE497820At02P002F03F091R1_048.ab1   436 
Contig length: old 871, new 871

Contig length: old 871, new 871
New start: 0