No. words: 1601; after pruning: 1575


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:815)  728  0.27 0.00 0.00  UCW006F_A05_BE497820Ld01P002F03F091F1_033.ab1        1   752 (0)  C UCW006R_A05_BE497820Ld01P002F03F091R1_033.ab1   (33)   816    65 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C UCW006R_A05_BE497820Ld01P002F03F091R1_033.ab1   849 
   41    UCW006F_A05_BE497820Ld01P002F03F091F1_033.ab1     8 
  213  C UCW006R_A05_BE497820Ld01P002F03F091R1_033.ab1   637 
  217    UCW006F_A05_BE497820Ld01P002F03F091F1_033.ab1   184 
  329  C UCW006R_A05_BE497820Ld01P002F03F091R1_033.ab1   521 
  333    UCW006F_A05_BE497820Ld01P002F03F091F1_033.ab1   300 
  341  C UCW006R_A05_BE497820Ld01P002F03F091R1_033.ab1   509 
  353    UCW006F_A05_BE497820Ld01P002F03F091F1_033.ab1   320 
  369  C UCW006R_A05_BE497820Ld01P002F03F091R1_033.ab1   481 
  381    UCW006F_A05_BE497820Ld01P002F03F091F1_033.ab1   348 
  385  C UCW006R_A05_BE497820Ld01P002F03F091R1_033.ab1   465 
  389    UCW006F_A05_BE497820Ld01P002F03F091F1_033.ab1   356 
  397  C UCW006R_A05_BE497820Ld01P002F03F091R1_033.ab1   453 
  461    UCW006F_A05_BE497820Ld01P002F03F091F1_033.ab1   428 
  465  C UCW006R_A05_BE497820Ld01P002F03F091R1_033.ab1   385 
  497    UCW006F_A05_BE497820Ld01P002F03F091F1_033.ab1   464 
  501  C UCW006R_A05_BE497820Ld01P002F03F091R1_033.ab1   349 
  509    UCW006F_A05_BE497820Ld01P002F03F091F1_033.ab1   476 
  513  C UCW006R_A05_BE497820Ld01P002F03F091R1_033.ab1   337 
  657    UCW006F_A05_BE497820Ld01P002F03F091F1_033.ab1   624 
  665  C UCW006R_A05_BE497820Ld01P002F03F091R1_033.ab1   185 
Contig length: old 849, new 849

Contig length: old 849, new 849
New start: 0 
S Change at: 37; seg lengths: entry 1, contig 1