No. words: 1605; after pruning: 1565


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:877)  688  0.69 0.00 0.27  UCW006F_B05_BE497820Ld02P002F03F091F1_041.ab1       23   750 (0)  C UCW006R_B05_BE497820Ld02P002F03F091R1_041.ab1   (0)   855   130 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1    UCW006F_B05_BE497820Ld02P002F03F091F1_041.ab1     1 
  327  C UCW006R_B05_BE497820Ld02P002F03F091R1_041.ab1   552 
  331    UCW006F_B05_BE497820Ld02P002F03F091F1_041.ab1   331 
  347  C UCW006R_B05_BE497820Ld02P002F03F091R1_041.ab1   532 
  363    UCW006F_B05_BE497820Ld02P002F03F091F1_041.ab1   363 
  391  C UCW006R_B05_BE497820Ld02P002F03F091R1_041.ab1   488 
  407    UCW006F_B05_BE497820Ld02P002F03F091F1_041.ab1   407 
  411  C UCW006R_B05_BE497820Ld02P002F03F091R1_041.ab1   468 
  415    UCW006F_B05_BE497820Ld02P002F03F091F1_041.ab1   415 
  427  C UCW006R_B05_BE497820Ld02P002F03F091R1_041.ab1   452 
  443    UCW006F_B05_BE497820Ld02P002F03F091F1_041.ab1   443 
  451  C UCW006R_B05_BE497820Ld02P002F03F091R1_041.ab1   428 
  455    UCW006F_B05_BE497820Ld02P002F03F091F1_041.ab1   455 
  471  C UCW006R_B05_BE497820Ld02P002F03F091R1_041.ab1   408 
  599    UCW006F_B05_BE497820Ld02P002F03F091F1_041.ab1   599 
  603  C UCW006R_B05_BE497820Ld02P002F03F091R1_041.ab1   276 
Contig length: old 878, new 878

Contig length: old 878, new 878
New start: 0