No. words: 1712; after pruning: 1686


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.3 (1,1:880)  813  0.12 0.00 0.00  UCW006F_E05_BE497820Ld05P002F03F091F1_035.ab1       16   846 (0)  C UCW006R_E05_BE497820Ld05P002F03F091R1_035.ab1   (0)   866    36 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  416 nodes

 210 str. conn. components

Path
    1    UCW006F_E05_BE497820Ld05P002F03F091F1_035.ab1     1 
  415  C UCW006R_E05_BE497820Ld05P002F03F091R1_035.ab1   467 
  419    UCW006F_E05_BE497820Ld05P002F03F091F1_035.ab1   419 
  487  C UCW006R_E05_BE497820Ld05P002F03F091R1_035.ab1   395 
  503    UCW006F_E05_BE497820Ld05P002F03F091F1_035.ab1   503 
  511  C UCW006R_E05_BE497820Ld05P002F03F091R1_035.ab1   371 
  527    UCW006F_E05_BE497820Ld05P002F03F091F1_035.ab1   527 
  535  C UCW006R_E05_BE497820Ld05P002F03F091R1_035.ab1   347 
Contig length: old 881, new 881

Contig length: old 881, new 881
New start: 0