No. words: 1741; after pruning: 1701


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 19.1 (1,1:881)  844  0.12 0.00 0.00  UCW006F_F05_BE497820Ld06P002F03F091F1_043.ab1       23   881 (0)  C UCW006R_F05_BE497820Ld06P002F03F091R1_043.ab1   (0)   860     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  428 nodes

 216 str. conn. components

Path
    1    UCW006F_F05_BE497820Ld06P002F03F091F1_043.ab1     1 
  403  C UCW006R_F05_BE497820Ld06P002F03F091R1_043.ab1   480 
  415    UCW006F_F05_BE497820Ld06P002F03F091F1_043.ab1   415 
  427  C UCW006R_F05_BE497820Ld06P002F03F091R1_043.ab1   456 
  439    UCW006F_F05_BE497820Ld06P002F03F091F1_043.ab1   439 
  459  C UCW006R_F05_BE497820Ld06P002F03F091R1_043.ab1   424 
  479    UCW006F_F05_BE497820Ld06P002F03F091F1_043.ab1   479 
  487  C UCW006R_F05_BE497820Ld06P002F03F091R1_043.ab1   396 
  515    UCW006F_F05_BE497820Ld06P002F03F091F1_043.ab1   515 
  519  C UCW006R_F05_BE497820Ld06P002F03F091R1_043.ab1   364 
  599    UCW006F_F05_BE497820Ld06P002F03F091F1_043.ab1   599 
  603  C UCW006R_F05_BE497820Ld06P002F03F091R1_043.ab1   280 
Contig length: old 882, new 882

Contig length: old 882, new 882
New start: 0