No. words: 1606; after pruning: 1580


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.9 (1,1:882)  700  0.00 0.00 0.14  UCW006F_H05_BE497820Ld08P002F03F091F1_044.ab1       23   745 (0)  C UCW006R_H05_BE497820Ld08P002F03F091R1_044.ab1   (0)   861   140 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  360 nodes

 182 str. conn. components

Path
    1    UCW006F_H05_BE497820Ld08P002F03F091F1_044.ab1     1 
  319  C UCW006R_H05_BE497820Ld08P002F03F091R1_044.ab1   566 
  323    UCW006F_H05_BE497820Ld08P002F03F091F1_044.ab1   323 
  407  C UCW006R_H05_BE497820Ld08P002F03F091R1_044.ab1   478 
  419    UCW006F_H05_BE497820Ld08P002F03F091F1_044.ab1   419 
  427  C UCW006R_H05_BE497820Ld08P002F03F091R1_044.ab1   458 
  443    UCW006F_H05_BE497820Ld08P002F03F091F1_044.ab1   443 
  447  C UCW006R_H05_BE497820Ld08P002F03F091R1_044.ab1   438 
  455    UCW006F_H05_BE497820Ld08P002F03F091F1_044.ab1   455 
  463  C UCW006R_H05_BE497820Ld08P002F03F091R1_044.ab1   422 
  507    UCW006F_H05_BE497820Ld08P002F03F091F1_044.ab1   507 
  511  C UCW006R_H05_BE497820Ld08P002F03F091R1_044.ab1   374 
  595    UCW006F_H05_BE497820Ld08P002F03F091F1_044.ab1   595 
  603  C UCW006R_H05_BE497820Ld08P002F03F091R1_044.ab1   282 
Contig length: old 883, new 884

Contig length: old 884, new 884
New start: 0