No. words: 1607; after pruning: 1567


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:866)  722  0.13 0.00 0.13  UCW006F_A06_BE497820Ld09P002F03F091F1_037.ab1       80   820 (0)  C UCW006R_A06_BE497820Ld09P002F03F091R1_037.ab1   (0)   787    48 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1    UCW006F_A06_BE497820Ld09P002F03F091F1_037.ab1     1 
  298  C UCW006R_A06_BE497820Ld09P002F03F091R1_037.ab1   570 
  318    UCW006F_A06_BE497820Ld09P002F03F091F1_037.ab1   318 
  334  C UCW006R_A06_BE497820Ld09P002F03F091R1_037.ab1   534 
  338    UCW006F_A06_BE497820Ld09P002F03F091F1_037.ab1   338 
  378  C UCW006R_A06_BE497820Ld09P002F03F091R1_037.ab1   490 
  382    UCW006F_A06_BE497820Ld09P002F03F091F1_037.ab1   382 
  390  C UCW006R_A06_BE497820Ld09P002F03F091R1_037.ab1   478 
  406    UCW006F_A06_BE497820Ld09P002F03F091F1_037.ab1   406 
  410  C UCW006R_A06_BE497820Ld09P002F03F091R1_037.ab1   458 
  426    UCW006F_A06_BE497820Ld09P002F03F091F1_037.ab1   426 
  438  C UCW006R_A06_BE497820Ld09P002F03F091R1_037.ab1   430 
  450    UCW006F_A06_BE497820Ld09P002F03F091F1_037.ab1   450 
  466  C UCW006R_A06_BE497820Ld09P002F03F091R1_037.ab1   402 
  470    UCW006F_A06_BE497820Ld09P002F03F091F1_037.ab1   470 
  474  C UCW006R_A06_BE497820Ld09P002F03F091R1_037.ab1   394 
  494    UCW006F_A06_BE497820Ld09P002F03F091F1_037.ab1   494 
  498  C UCW006R_A06_BE497820Ld09P002F03F091R1_037.ab1   370 
Contig length: old 867, new 867

Contig length: old 867, new 867
New start: 0