No. words: 1461; after pruning: 1421


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 9.2 (1,1:831)  554  0.68 0.17 0.34  UCW055_G11_BE497820Sn25P033E01P002F031R1_083.ab1      244   834 (32)  C UCW056_G11_BE497820Sn25P033E01P002F031F1_083.ab1   (5)   590     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1    UCW055_G11_BE497820Sn25P033E01P002F031R1_083.ab1     1 
  387  C UCW056_G11_BE497820Sn25P033E01P002F031F1_083.ab1   446 
  391    UCW055_G11_BE497820Sn25P033E01P002F031R1_083.ab1   391 
  451  C UCW056_G11_BE497820Sn25P033E01P002F031F1_083.ab1   382 
  467    UCW055_G11_BE497820Sn25P033E01P002F031R1_083.ab1   467 
  475  C UCW056_G11_BE497820Sn25P033E01P002F031F1_083.ab1   358 
  483    UCW055_G11_BE497820Sn25P033E01P002F031R1_083.ab1   483 
  487  C UCW056_G11_BE497820Sn25P033E01P002F031F1_083.ab1   346 
  495    UCW055_G11_BE497820Sn25P033E01P002F031R1_083.ab1   495 
  507  C UCW056_G11_BE497820Sn25P033E01P002F031F1_083.ab1   326 
  511    UCW055_G11_BE497820Sn25P033E01P002F031R1_083.ab1   511 
  519  C UCW056_G11_BE497820Sn25P033E01P002F031F1_083.ab1   314 
  551    UCW055_G11_BE497820Sn25P033E01P002F031R1_083.ab1   551 
  563  C UCW056_G11_BE497820Sn25P033E01P002F031F1_083.ab1   270 
  587    UCW055_G11_BE497820Sn25P033E01P002F031R1_083.ab1   587 
  603  C UCW056_G11_BE497820Sn25P033E01P002F031F1_083.ab1   230 
  809    UCW055_G11_BE497820Sn25P033E01P002F031R1_083.ab1   809 
  817  C UCW056_G11_BE497820Sn25P033E01P002F031F1_083.ab1    17 
  821    UCW055_G11_BE497820Sn25P033E01P002F031R1_083.ab1   821 
Contig length: old 866, new 866

Contig length: old 866, new 866
New start: 0