No. words: 1282; after pruning: 1256


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:824)  418  0.00 0.00 0.00  UCW055_G12_BE497820Sn32P033E01P002F031R1_084.ab1      401   825 (32)  C UCW056_G12_BE497820Sn32P033E01P002F031F1_084.ab1   (0)   425     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1    UCW055_G12_BE497820Sn32P033E01P002F031R1_084.ab1     1 
  516  C UCW056_G12_BE497820Sn32P033E01P002F031F1_084.ab1   310 
  520    UCW055_G12_BE497820Sn32P033E01P002F031R1_084.ab1   520 
  524  C UCW056_G12_BE497820Sn32P033E01P002F031F1_084.ab1   302 
  532    UCW055_G12_BE497820Sn32P033E01P002F031R1_084.ab1   532 
  556  C UCW056_G12_BE497820Sn32P033E01P002F031F1_084.ab1   270 
  564    UCW055_G12_BE497820Sn32P033E01P002F031R1_084.ab1   564 
  568  C UCW056_G12_BE497820Sn32P033E01P002F031F1_084.ab1   258 
  576    UCW055_G12_BE497820Sn32P033E01P002F031R1_084.ab1   576 
  592  C UCW056_G12_BE497820Sn32P033E01P002F031F1_084.ab1   234 
  728    UCW055_G12_BE497820Sn32P033E01P002F031R1_084.ab1   728 
  736  C UCW056_G12_BE497820Sn32P033E01P002F031F1_084.ab1    90 
  772    UCW055_G12_BE497820Sn32P033E01P002F031R1_084.ab1   772 
  780  C UCW056_G12_BE497820Sn32P033E01P002F031F1_084.ab1    46 
  800    UCW055_G12_BE497820Sn32P033E01P002F031R1_084.ab1   800 
  804  C UCW056_G12_BE497820Sn32P033E01P002F031F1_084.ab1    22 
  808    UCW055_G12_BE497820Sn32P033E01P002F031R1_084.ab1   808 
Contig length: old 857, new 857

Contig length: old 857, new 857
New start: 0