No. words: 1721; after pruning: 1681


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.6 (1,1:823)  798  0.12 0.12 0.12  UCW055_C05_BE497820Ta11P033D01P002F031R1_043.ab1        1   823 (40)  C UCW056_C05_BE497820Ta11P033D01P002F031F1_043.ab1   (34)   824     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1  C UCW056_C05_BE497820Ta11P033D01P002F031F1_043.ab1   858 
   60    UCW055_C05_BE497820Ta11P033D01P002F031R1_043.ab1    25 
  204  C UCW056_C05_BE497820Ta11P033D01P002F031F1_043.ab1   655 
  208    UCW055_C05_BE497820Ta11P033D01P002F031R1_043.ab1   173 
  228  C UCW056_C05_BE497820Ta11P033D01P002F031F1_043.ab1   631 
  232    UCW055_C05_BE497820Ta11P033D01P002F031R1_043.ab1   197 
  240  C UCW056_C05_BE497820Ta11P033D01P002F031F1_043.ab1   619 
  260    UCW055_C05_BE497820Ta11P033D01P002F031R1_043.ab1   225 
  264  C UCW056_C05_BE497820Ta11P033D01P002F031F1_043.ab1   595 
  548    UCW055_C05_BE497820Ta11P033D01P002F031R1_043.ab1   513 
  556  C UCW056_C05_BE497820Ta11P033D01P002F031F1_043.ab1   303 
  841    UCW055_C05_BE497820Ta11P033D01P002F031R1_043.ab1   806 
Contig length: old 897, new 898

Contig length: old 898, new 898
New start: 0