No. words: 1131; after pruning: 1105


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.4 (1,1:818)  256  0.36 0.00 0.72  UCW055_E05_BE497820Ta13P033D01P002F031R1_039.ab1      546   821 (36)  C UCW056_E05_BE497820Ta13P033D01P002F031F1_039.ab1   (0)   274     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  132 nodes

 68 str. conn. components

Path
    1    UCW055_E05_BE497820Ta13P033D01P002F031R1_039.ab1     1 
  645  C UCW056_E05_BE497820Ta13P033D01P002F031F1_039.ab1   175 
  649    UCW055_E05_BE497820Ta13P033D01P002F031R1_039.ab1   649 
  653  C UCW056_E05_BE497820Ta13P033D01P002F031F1_039.ab1   167 
  665    UCW055_E05_BE497820Ta13P033D01P002F031R1_039.ab1   665 
  701  C UCW056_E05_BE497820Ta13P033D01P002F031F1_039.ab1   119 
  733    UCW055_E05_BE497820Ta13P033D01P002F031R1_039.ab1   733 
  737  C UCW056_E05_BE497820Ta13P033D01P002F031F1_039.ab1    83 
  773    UCW055_E05_BE497820Ta13P033D01P002F031R1_039.ab1   773 
  777  C UCW056_E05_BE497820Ta13P033D01P002F031F1_039.ab1    43 
  810    UCW055_E05_BE497820Ta13P033D01P002F031R1_039.ab1   811 
Contig length: old 857, new 856

Contig length: old 856, new 857
New start: 0 
I Change at: 803; seg lengths: entry 1, contig 0