No. words: 1724; after pruning: 1684


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.3 (1,1:826)  805  0.12 0.00 0.24  UCW055_C10_BE497820Ta13P033E01P002F031R1_076.ab1        1   828 (30)  C UCW056_C10_BE497820Ta13P033E01P002F031F1_076.ab1   (40)   826     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1  C UCW056_C10_BE497820Ta13P033E01P002F031F1_076.ab1   866 
   56    UCW055_C10_BE497820Ta13P033E01P002F031R1_076.ab1    16 
   80  C UCW056_C10_BE497820Ta13P033E01P002F031F1_076.ab1   787 
   84    UCW055_C10_BE497820Ta13P033E01P002F031R1_076.ab1    44 
  208  C UCW056_C10_BE497820Ta13P033E01P002F031F1_076.ab1   659 
  216    UCW055_C10_BE497820Ta13P033E01P002F031R1_076.ab1   176 
  248  C UCW056_C10_BE497820Ta13P033E01P002F031F1_076.ab1   619 
  843    UCW055_C10_BE497820Ta13P033E01P002F031R1_076.ab1   803 
Contig length: old 897, new 898

Contig length: old 898, new 898
New start: 0