No. words: 1185; after pruning: 1145


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.7 (1,1:826)  301  0.62 0.00 0.92  UCW055_E10_BE497820Ta15P033E01P002F031R1_072.ab1      506   830 (33)  C UCW056_E10_BE497820Ta15P033E01P002F031F1_072.ab1   (0)   322     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  148 nodes

 76 str. conn. components

Path
    1    UCW055_E10_BE497820Ta15P033E01P002F031R1_072.ab1     1 
  626  C UCW056_E10_BE497820Ta15P033E01P002F031F1_072.ab1   202 
  669    UCW055_E10_BE497820Ta15P033E01P002F031R1_072.ab1   669 
  673  C UCW056_E10_BE497820Ta15P033E01P002F031F1_072.ab1   155 
  677    UCW055_E10_BE497820Ta15P033E01P002F031R1_072.ab1   677 
  697  C UCW056_E10_BE497820Ta15P033E01P002F031F1_072.ab1   131 
  733    UCW055_E10_BE497820Ta15P033E01P002F031R1_072.ab1   733 
  737  C UCW056_E10_BE497820Ta15P033E01P002F031F1_072.ab1    91 
  777    UCW055_E10_BE497820Ta15P033E01P002F031R1_072.ab1   777 
  781  C UCW056_E10_BE497820Ta15P033E01P002F031F1_072.ab1    47 
  805    UCW055_E10_BE497820Ta15P033E01P002F031R1_072.ab1   805 
Contig length: old 863, new 863

Contig length: old 863, new 863
New start: 0