No. words: 1253; after pruning: 1227


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:818)  423  0.00 0.00 0.00  UCW055_H05_BE497820Ta16P033D01P002F031R1_033.ab1      303   736 (0)  C UCW056_H05_BE497820Ta16P033D01P002F031F1_033.ab1   (0)   517    84 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1    UCW055_H05_BE497820Ta16P033D01P002F031R1_033.ab1     1 
  454  C UCW056_H05_BE497820Ta16P033D01P002F031F1_033.ab1   366 
  510    UCW055_H05_BE497820Ta16P033D01P002F031R1_033.ab1   510 
  514  C UCW056_H05_BE497820Ta16P033D01P002F031F1_033.ab1   306 
  546    UCW055_H05_BE497820Ta16P033D01P002F031R1_033.ab1   546 
  582  C UCW056_H05_BE497820Ta16P033D01P002F031F1_033.ab1   238 
Contig length: old 819, new 819

Contig length: old 819, new 819
New start: 0