No. words: 1684; after pruning: 1658


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 17.1 (1,1:818)  797  0.00 0.00 0.12  UCW055_B06_BE497820Ta18P033D01P002F031R1_046.ab1        1   817 (10)  C UCW056_B06_BE497820Ta18P033D01P002F031F1_046.ab1   (39)   818     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  408 nodes

 206 str. conn. components

Path
    1  C UCW056_B06_BE497820Ta18P033D01P002F031F1_046.ab1   857 
   63    UCW055_B06_BE497820Ta18P033D01P002F031R1_046.ab1    24 
  203  C UCW056_B06_BE497820Ta18P033D01P002F031F1_046.ab1   655 
  207    UCW055_B06_BE497820Ta18P033D01P002F031R1_046.ab1   168 
  223  C UCW056_B06_BE497820Ta18P033D01P002F031F1_046.ab1   635 
  839    UCW055_B06_BE497820Ta18P033D01P002F031R1_046.ab1   800 
Contig length: old 865, new 866

Contig length: old 866, new 866
New start: 0